Package: geneNR 1.0.1
geneNR: Automated Gene Identification for Post-GWAS Analysis
Facilitates the post-Genome Wide Association Studies (GWAS) analysis of identifying candidate genes within user-defined search window, based on the identified Single Nucleotide Polymorphisms (SNPs) as given by Mazumder AK (2024) <doi:10.1038/s41598-024-66903-3>. It supports candidate gene analysis for wheat and rice. Just import your GWAS result as explained in the sample_data file and the function does all the manual search and retrieve candidate genes for you, while exporting the results into ready-to-use output.
Authors:
geneNR_1.0.1.tar.gz
geneNR_1.0.1.zip(r-4.5)geneNR_1.0.1.zip(r-4.4)geneNR_1.0.1.zip(r-4.3)
geneNR_1.0.1.tgz(r-4.5-any)geneNR_1.0.1.tgz(r-4.4-any)geneNR_1.0.1.tgz(r-4.3-any)
geneNR_1.0.1.tar.gz(r-4.5-noble)geneNR_1.0.1.tar.gz(r-4.4-noble)
geneNR_1.0.1.tgz(r-4.4-emscripten)geneNR_1.0.1.tgz(r-4.3-emscripten)
geneNR.pdf |geneNR.html✨
geneNR/json (API)
# Install 'geneNR' in R: |
install.packages('geneNR', repos = c('https://nirmalaruban.r-universe.dev', 'https://cloud.r-project.org')) |
- sample_data_rice - Sample Data
- sample_data_wheat - Sample Data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 days agofrom:200d5e33fd. Checks:9 OK. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Mar 11 2025 |
R-4.5-win | OK | Mar 11 2025 |
R-4.5-mac | OK | Mar 11 2025 |
R-4.5-linux | OK | Mar 11 2025 |
R-4.4-win | OK | Mar 11 2025 |
R-4.4-mac | OK | Mar 11 2025 |
R-4.4-linux | OK | Mar 11 2025 |
R-4.3-win | OK | Mar 11 2025 |
R-4.3-mac | OK | Mar 11 2025 |
Exports:geneSNP
Dependencies:askpassbitbit64clicliprcpp11crayoncurlfansigluehmshttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitsprogressR6readrrlangrvestselectrstringistringrsystibbletidyselecttzdbutf8vctrsvroomwithrwritexlxml2
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Identifies Candidate Genes based on identified Single Nucleotide Ploymorphisms (SNPs) from Genome Wide Association Stuides (GWAS) Analysis | geneSNP |
Sample Data | sample_data_rice |
Sample Data | sample_data_wheat |