Package: geneNR 1.0.1

geneNR: Automated Gene Identification for Post-GWAS Analysis

Facilitates the post-Genome Wide Association Studies (GWAS) analysis of identifying candidate genes within user-defined search window, based on the identified Single Nucleotide Polymorphisms (SNPs) as given by Mazumder AK (2024) <doi:10.1038/s41598-024-66903-3>. It supports candidate gene analysis for wheat and rice. Just import your GWAS result as explained in the sample_data file and the function does all the manual search and retrieve candidate genes for you, while exporting the results into ready-to-use output.

Authors:Rajamani Nirmalaruban [aut, cre, cph], R. Suvitha [aut], Rajbir Yadav [aut], Meda Alekya [aut], Amit Kumar Mazumder [aut], Subramani Sugumar [aut], Prashanth babu [aut], Manjeet Kumar [aut], Kiran B Gaikwad [aut], Naresh Kumar Bainsla [aut], S. Bhaskar Reddy [aut]

geneNR_1.0.1.tar.gz
geneNR_1.0.1.zip(r-4.5)geneNR_1.0.1.zip(r-4.4)geneNR_1.0.1.zip(r-4.3)
geneNR_1.0.1.tgz(r-4.5-any)geneNR_1.0.1.tgz(r-4.4-any)geneNR_1.0.1.tgz(r-4.3-any)
geneNR_1.0.1.tar.gz(r-4.5-noble)geneNR_1.0.1.tar.gz(r-4.4-noble)
geneNR_1.0.1.tgz(r-4.4-emscripten)geneNR_1.0.1.tgz(r-4.3-emscripten)
geneNR.pdf |geneNR.html
geneNR/json (API)

# Install 'geneNR' in R:
install.packages('geneNR', repos = c('https://nirmalaruban.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 1 exports 38 dependencies

Last updated 6 days agofrom:200d5e33fd. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 11 2025
R-4.5-winOKMar 11 2025
R-4.5-macOKMar 11 2025
R-4.5-linuxOKMar 11 2025
R-4.4-winOKMar 11 2025
R-4.4-macOKMar 11 2025
R-4.4-linuxOKMar 11 2025
R-4.3-winOKMar 11 2025
R-4.3-macOKMar 11 2025

Exports:geneSNP

Dependencies:askpassbitbit64clicliprcpp11crayoncurlfansigluehmshttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitsprogressR6readrrlangrvestselectrstringistringrsystibbletidyselecttzdbutf8vctrsvroomwithrwritexlxml2

Introduction of 'geneNR'

Rendered fromgeneNR_1.Rmdusingknitr::rmarkdownon Mar 11 2025.

Last update: 2025-03-10
Started: 2025-03-10