NEWS

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geneNR 2.0.1 (2025-03-29)

New Functions and Features

• geneQTL: Identifies candidate genes based on Quantitative Trait Loci (QTL) analysis.
• import_hmp: Enables importing Hapmap genotypic data files.
• import_vcf: Provides support for importing VCF (Variant Call Format) data files.
• plot_SNP: Visualizes SNP distribution on a chromosome map.
• plot_summariseSNP: Plots SNP distribution across chromosomes.
• summariseSNP: Calculates SNP distribution across chromosomes.
• summariseSNP_vcf: Calculates SNP distribution across chromosomes from VCF data.

Sample Data Additions

• sample_data_rice, sample_data_rice_qtl: Added rice sample datasets.
• sample_data_wheat, sample_data_wheat_custom, sample_data_wheat_qtl: Added wheat sample datasets.

Enhancements

• Improved functionality and performance of existing features.
• Updated documentation for better clarity and usability.